Open peer commentary on the article “Body Awareness to Recognize Feelings: The Exploration of a Musical Emotional Experience” by Alejandra Vásquez-Rosati. Upshot: The enactment view echoes the deeper biology and chemistry of emotion. Music resonates innately because emotional evaluation is the evolutionary grandfather of all senses.

Although augmenting rational models with cognitive constraints is long overdue, the emotional system – our innatelyevaluative “affective” constraints– is missing from the model. Factoring in the informational nature of emotional perception, its explicitself-regulatoryfunctional logic, and the predictable pitfalls of its hardwired behavioral responses (including a maladaptive form of “identity management”) can offer dramatic enhancements.

Our aim in this article is to attempt to discuss propagating organization of process, a poorly articulated union of matter, energy, work, constraints and that vexed concept, “information”, which unite in far from equilibrium living physical systems. Our hope is to stimulate discussions by philosophers of biology and biologists to further clarify the concepts we discuss here. We place our discussion in the broad context of a “general biology”, properties that might well be found in life anywhere in the cosmos, (...) freed from the specific examples of terrestrial life after 3.8 billion years of evolution. By placing the discussion in this wider, if still hypothetical, context, we also try to place in context some of the extant discussion of information as intimately related to DNA, RNA and protein transcription and translation processes. While characteristic of current terrestrial life, there are no compelling grounds to suppose the same mechanisms would be involved in any life form able to evolve by heritable variation and natural selection. In turn, this allows us to discuss at least briefly, the focus of much of the philosophy of biology on population genetics, which, of course, assumes DNA, RNA, proteins, and other features of terrestrial life. Presumably, evolution by natural selection—and perhaps self-organization—could occur on many worlds via different causal mechanisms. Here we seek a non-reductionist explanation for the synthesis, accumulation, and propagation of information, work, and constraint, which we hope will provide some insight into both the biotic and abiotic universe, in terms of both molecular self reproduction and the basic work energy cycle where work is the constrained release of energy into a few degrees of freedom. The typical requirement for work itself is to construct those very constraints on the release of energy that then constitute further work. Information creation, we argue, arises in two ways: first information as natural selection assembling the very constraints on the release of energy that then constitutes work and the propagation of organization. Second, information in a more extended sense is “semiotic”, that is about the world or internal state of the organism and requires appropriate response. The idea is to combine ideas from biology, physics, and computer science, to formulate explanatory hypotheses on how information can be captured and rendered in the expected physical manifestation, which can then participate in the propagation of the organization of process in the expected biological work cycles to create the diversity in our observable biosphere. Our conclusions, to date, of this enquiry suggest a foundation which views information as the construction of constraints, which, in their physical manifestation, partially underlie the processes of evolution to dynamically determine the fitness of organisms within the context of a biotic universe. (shrink)

George A. Olah, Alain Goeppert and G. K. Surya Prakash (eds): Beyond oil and gas: the methanol economy, 2nd updated and enlarged edition Content Type Journal Article Category Book Review Pages 1-2 DOI 10.1007/s10698-011-9141-x Authors George B. Kauffman, Department of Chemistry, California State University, Fresno, Fresno, CA 93740-8034, USA Journal Foundations of Chemistry Online ISSN 1572-8463 Print ISSN 1386-4238.

Open peer commentary on the article “Cybernetics, Reflexivity and Second-Order Science” by Louis H. Kauffman. Upshot: I demonstrate how Kauffman’s cogently argued article requires an act of imagination. I distinguish the act of perception, and its transformation as conception, as imagining. It is how we distinguish both the creation and exploration of our experience in context since, when we make a distinction, we also define the context, and this cannot be accomplished without circularity.

Understanding the operation and evolution of gene regulation networks is critical to understanding ontogeny and evolution. According to Stuart Kauffman's view, (1) each cell type cycles through its own repeated pattern of gene expression, (2) the order of ontogeny is dependent on these cycles being short, and (3) evolution is possible because these cycles mutate gradually. This view of gene regulation reflects Kauffman's view that ontogeny is fundamentally the process of cells repeating cycles of activity. I criticize (...) class='Hi'>Kauffman's view of gene regulation networks and offer the connectionist theory of gene regulation as an alternative. On this view, the generic order of gene regulation mechanisms is due to the qualitatively consistent way that one gene product influences the expression of another. This allows networks to be stable and evolve to regulate accurately, allowing cells to react appropriately to their microenvironments, due to design by natural selection. 1. Introduction2. Kauffman's Model of Gene Regulation3. Explaining the Order of Kauffman's K = 2 Networks4. The Importance and Relevance of Kauffman's Explanations of the Order of Gene Regulation5. Additional Orderly Facts of Transcription6. The Order of Network Accuracy7. The Accuracy of Connectionist Networks8. The Evolvability of Gene Regulation Networks9. Laws of Structure. (shrink)

My aim in this paper is to re-examine specialization in science. I argue that we need to acknowledge the role that conceptual changes can play in the creation of new specialties. Whereas earlier sociological accounts focus on social and instrumental changes as the cause of the creation of new specialties, I argue that conceptual changes play an important role in the creation of some scientific specialties. Specifically, I argue that conceptual developments played an important role in the creation of both (...) endocrinology and virology. (shrink)

Some preliminary comments Introduction: The EDWs perspective in my article from 2005 and my book from 2008 -/- I. PHYSICS, COGNITIVE NEUROSCIENCE, PHILOSOPHY (‘REBORN DINOSAURS’ ) • (2016) Did Sean Carroll’s ideas (California Institute of Technology, USA) (within the wrong framework, the “universe”) plagiarize my ideas (2002-2010) (within the EDWs framework) on quantum mechanics, the relationship between Einstein relativity and quantum mechanics, life, the mind-brain problem, etc.? • (2016) The unbelievable similarities between Frank Wilczek’s ideas (Nobel Prize in Physics) and (...) my ideas (2002-2008, etc.) (Philosophy of Mind and Quantum Mechanics) • (2017-2019 NEW) Strong similarity between Carlo Rovelli’s ideas (Italy) in three books (2015, 2017) to my ideas (2002-2008) + commentary February 2018! • (2016) Kastner + (2017) R. E. Kastner, Stuart Kauffman, Michael Epperson “Taking Heisenberg’s Potentia Seriously”: Quite similar ideas to my ideas (2008) + • (2017) A trick: Unbelievable similarities between Lee Smolin’s ideas (2017) and my ideas (2002-2008) • (May 2018) ‘Thus spoke Zarathustra!’ - A fairy-tale with Eugen Ionesco and the Idiot about Nothingness -/- II. PHYSICS • (2011) The unbelievable similarities between Radu Ionicioiu (Physics, University of Bucharest, Romania) and Daniel R. Terno’s ideas (Physics, Macquarie University, Sydney, Australia) and my ideas (Quantum Mechanics) • (2013) Côté B. Gilbert (Oontario, Canada) Unbelievalbe similarities • (2015) The strong similarity between Pikovski Igor, Zych Magdalena, Costa Fabio, and Brukner Časlav’s ideas and my ideas (2006-2008) regarding the Schrodinger’s cat’s interactions with its environment (the gravitation of Earth) (both entities being macro-objects) (Quantum Mechanics) • (2015) The strong similarity between Elisabetta Caffau’s ideas (Center for Astronomy at the University of Heidelberg and the Paris Observatory) and my ideas (2011, 2014) regarding the appearance of Big Bang in many places (Cosmology) • (2015) Did Wolfram Schommers (University of Texas at Arlington, USA & Karlsruhe Institute of Technology, Germany) plagiarize my ideas? (Physics) • (2015) Some astrophysicists about "Dark Matter May be 'Another Dimension' - Or Even a Major Galactic Transport System" January 22, 2015 • (2016) The strong similarities between Dylan H. Mahler, Lee Rozema, Kent Fisher, Lydia Vermeyden, Kevin J. Resch, Howard M. Wiseman, and Aephraim Steinberg’s ideas (USA) and my ideas (Quantum Mechanics) • (2016) The unbelievable similarities between Bill Poirier’s ‘Many Interacting Worlds’ and my EDWs (Quantum Mechanics) • (2016 or 2017) Similarities between Adam Frank’s ideas (University of Rochester in New York , USA) (“Minding matter - The closer you look, the more the materialist position in physics appears to rest on shaky metaphysical ground”) and my ideas (2005, 2008) • (2017, 2017) Did Sebastian de Haro (HPS, Cambridge, UK) plagiarize my ideas (2002-2008) • (2017) Unbelievable similarities between Laura Condiotto’s ideas and my ideas (2002-2008) • (2016) The unbelievable similarities between Hugo F. Alrøe and Egon Noe’s (Department of Agroecology, Aarhus University, Denmark) ideas (USA) and my ideas (2002-2008) (Bohr's complementarity extended to ontology) • (2017) The unbelievable similar ideas between Federico Zalamea’s ideas and my ideas • (2018) Unbelievable similarities between Peter J. Lewis’s ideas (2018) and my ideas (2002-2008) • (2018) Timothy Hollowood, ‘Classical from Quantum’, [arXiv:1803.04700v1 [quant-ph] 13 March 2018] • (2018) Mario Hubert and Davide Romano, ‘The Wave-Function as a Multi-Field’ -/- III. COGNITIVE NEUROSCIENCE AND PHILOSOPHY OF MIND • (2011-2014) Did Georg Northoff (Psychoanalysis, Institute of Mental Health) plagiarize my ideas (2002-2008)? • (2011) The unbelievable similarities between Kalina Diego Cosmelli, Legrand Dorothée and Thompson Evan’s ideas (USA) and my ideas (Cognitive Neuroscience) • (2015) Did David Ludwig (Philosophy, University of Amsterdam) plagiarize many of my ideas? (Philosophy (of Mind) • (2016) Did Neil D. Theise (Department of Pathology, Icahn School of Medicine at Mount Sinai, New York, USA) and Kafatos C. Menas (Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, USA) plagiarize my ideas of Physics and Cognitive Neuroscience and Philosophy (the mind-brain problem, quantum mechanics, etc.) from 2002-2008? • Did David Bourget (2018) (Director, Centre for Digital Philosophy, Western University (or University of Western Ontario) plagiarize my ideas regarding the mind-brain problem? + Chalmers • (2016) Unbelievable similarities between Dan Siegel’s ideas (Mindsight Institute, USA) and my ideas (2002-2008) -/- IV. Philosophy (of science) • (2010) The unbelievable similarities between Alexey Alyushin (Moscow, Russia) and my ideas (on Ontology) • (2013 + 2017) Did Markus Gabriel (Bonn University) plagiarize my ideas? • (2013) The unbelievable similarities between Andrew Newman’s ideas (University of Nebraska, at Omaha, USA) and my ideas (Ontology) • (2016) Did Tahko E. Tuomas (University of Helsinki, Finland) plagiarize my ideas? + Tahko E. Tuomas (‘The Epistemology of Essence’) • (2017) Did Jani Hakkarainen (University of Tampere, Finland) plagiarize my ideas (2002-2008)? + (2017) Markku Keinänen, Antti Keskinen & Jani Hakkarainen • (2017) The unbelievable similarities between Dean Rickles’s ideas (HPS, Univ. of Sydney) and my ideas (2002-2008) • (2017) Did Dirk K. F. Meijer and Hans J. H. Geesink (University of Groningen, Netherlands) plagiarize my ideas (2002-2008)? (2017) • (2018) Unbelievable similar ideas between Jason Winning’s ideas (2018) and my ideas (2002-2008) • (2018) David Mark Kovacs (Lecturer of philosophy at Tel Aviv University), ‘The Deflationary Theory of Ontological Dependence’, Philosophical Quarterly (forthcoming) -/- Conclusion [Obviously, there are other “specialists” that published UNBELIEVABLE similar ideas to my ideas but I have not discovered them yet…] Bibliography [Some people haven't read my works but they claim my ideas can be found in other works. Soon, they will discover EDWs in Shakespeare, Bach, Sophocles and ET's letter sent 10 million years ago... me vs. people who have plagiarized my ideas: on Youtube] ------------------------------------------------------------------ July 2018 -/- • Oreste M. Fiocco • Baptiste Le Bihan (University of Geneva, forthcoming) • Antonella Mallozzi (The Graduate Center – CUNY, forthcoming in Synthese, penultimate draft) • Erik C. Banks (Wright State University, 2014) • Sami Pihlström (2009) • Katherin Koslicki’s ideas (2008) The Structure of Objects, Oxford University Press) and my ideas (2002-2005-2006) -/- November 2018 • Maurizio Ferraris (2014/2012) Manifesto of New Realism -/- • Graham Harman (2017) : Object-Oriented Ontology: A New Theory of Everything (Penguin Books) ---------------------------------------------------------------- -/- January 2019 • Philip Ball (2018): “Why everything you thought you knew about quantum physics is different” • Gerhard Grössing “Vacuum landscaping: cause of nonlocal influences without signaling” • Anne Sophie Meincke (November 2018) The Disappearance of Change (IJPS) 28. The Disappearance of Change Towards a Process Account of Persistence Forthcoming in: International Journal of Philosophical Studies DOI: 10.1080/09672559.2018.1548634 • Baptiste Le Bihana (University of Geneva) and James Read (Oxford Univ.) “Duality and Ontology” (forthcoming, in Philosophy Compass) • Baptiste Le Bihan (University of Geneva): “Space Emergence in Contemporary Physics: Why We Do Not Need Fundamentality, Layers of Reality and Emergence” in Disputatio, Vol. X, No. 49, November 2018 • Alexander Alexandrovich Antonov (2016) (Research Center of Information Technologies “TELAN Electronics”, Kiev, Ukraine): “Hypothesis of the Hidden Multiverse Explains Dark Matter and Dark Energy”, Journal of Modern Physics, 2016, 7, 1228-1246 -/- February 2019 • James Barham (2019): “The Reality of Purpose and the Reform of Naturalism” • Giorgio Lando (2017) Mereology - A Philosophical Introduction, Bloomsbury Academic • (2018) Albrecht von M¨uller • Elias Zafiris, Concept and Formalization of Constellatory Self-Unfolding - A Novel Perspective on the Relation between Quantum and Relativistic Physics • (2019) Flaminia Giacomini, Esteban Castro-Ruiz, & Časlav Brukner “Quantum mechanics and the covariance of physical laws in quantum reference frames”, Nature Communications • (2019) Valia Allori, “Scientific Realism without the Wave-Function: An Example of Naturalized Quantum Metaphysics” (to appear in J. Saatsi, S. French (eds.) “Scientific Realism and the Quantum” OUP (2019) - Department of Philosophy Northern Illinois University) • (2018) Paulo De Jesus “Thinking through enactive agency: sense-making, bio-semiosis and the ontologies of organismic worlds”, Phenom Cogn Sci • (2016) TIMOTHY MORTON, For a Logic of Future Coexistence, (Columbia University Press) • (2017) Andrew Cooper, Two directions for teleology: naturalism and idealism, Synthese . (shrink)

Open peer commentary on the article “The Banathy Conversation Methodology” by Gordon Dyer, Jed Jones, Gordon Rowland & Silvia Zweifel. Upshot: I compare two closely related methodologies: the Banathy Conversation Methodology and Structured Dialogic Design (or Structured Democratic Dialogue, SDD.

A partir de son apparemment étrange observation d'une influence cachée des étoiles sur l'action humaine une attentive reconsidération du concept de l'actus humanus de Saint Thomas dans la Prima Secundae révèle une vue plus ample des processus internes à l'agent humain qui contribuent à la spécification individuelle de l'action humaine et, donc, de la liberté humaine. Il semble que parmi les adeptes de la théorie thomiste de l'action, l'influence importante que l'appétit sensible peut exercer en cette direction, tout en restant (...) entièrement caché aux actes conscients de l'intellect et de la volonté de la personne, n'a pas été reconnue jusqu'aujourd'hui. Dans sa théorie de l'action Saint Thomas fournit un cadre solide pour une réflexion ultérieure sur l'influence de l'inconscient dynamique sur la liberté et pour une intégration critique interdisciplinaire des intuitions valides de la psychologie des profondeurs. En plus, il semble que la redécouverte de son concept plus large de l'actus humunus rende possible de repenser à profit certains éléments classique de son éthique. (shrink)

The concept of the gene has been the central organizing theme of 20th century biology. Biology has become increasingly influential both for philosophers seeking a naturalized basis for epistemology, ethics, and the understanding of the mind, as well as for the human sciences generally. The central task of this work is to get the story right about genes and in so doing provide a critical and enabling resourse for use in the further pursuit of human self-understanding. ;The work begins with (...) a wide-ranging historical reconstruction and conceptual analysis of the meaning of "the gene" that results in defining and distinguishing two different "genes". Each of these can be seen as an heir to one of the two major historical trends in explaining the source of biological order---preformationism and epigenesis. The preformationist gene predicts phenotypes but only on an instrumental basis where immediate medical and/or economic benefits can be had. The gene of epigenesis , by contrast, is a developmental resource that provides templates for RNA and protein synthesis but has in itself no determinate relationship to organismal phenotypes. The seemingly prevalent idea that genes constitute information for traits is based, I argue, upon an unwarranted conflation of these two senses which is in effect held together by rhetorical glue. Beyond this historical, conceptual, and rhetorical inquiry the bulk of the dissertation then concerns itself with an empirically up-to-date analysis of the cell and molecular basis of biological order and of the pathological loss of same. In each of these chapters I structure my analysis with the idea in mind that the "conflated" view can be held empirically accountable. Major touchpoints in this work include the ideas of I. Kant, J. Blumenbach, K. E. von Baer, J. Muller, R. Virchow, W. Johannsen, R. Falk, J. Sapp, E. Schrodinger, M. Delbruick, G. Gamow, R. Doyle, L. Kay, S. Kauffman, E. Jablonka, J. Rothman, K. Yamamoto, P. Rous, H. Temin, J. M. Bishop, H. Harris, E. Stanbridge, D. L. Smithers, B. Vogelstein, E. Farber and H. Rubin. (shrink)

Aristotle claims man is a political animal and that the polis exists by nature. Taking literally his analogy between the legislator and the craftsman, Aristotle's critics contend that he 'blunders' because the polis is artificial, devised by a legislator/founder and imposed on a people. We defend Aristotle's claims by showing, first, how Aristotle's claim that man is by nature an animal possessing logos -- speech/reason -- grounds his account of the natural development of the polis out of the earliest partnerships (...) (which the critics concede are natural); second, that the person who first brought people together in a polis may well have done so without realizing the scope of his actions; and, finally, that the developmental process is clearly one of praxis (action), not poisis (making, the imposition of a form on matter). Aristotle's claims are evidenced by the Homeric hero Philoctetes, whom one critic takes to disprove Aristotle's theses. (shrink)

What happens to the inner light of consciousness with the death of the individual body and brain? Reductive materialism assumes it simply fades to black. Others think of consciousness as indicating a continuation of self, a transformation, an awakening or even alternatives based on the quality of life experience. In this issue, speculation drawn from theoretic research are presented. -/- Table of Contents Epigraph: From “The Immortal”, Jorge Luis Borges iii Editor’s Introduction: I Killed a Squirrel the Other Day, Gregory (...) M. Nixon iv-xi Research Essays The Tilde Fallacy and Reincarnation: Variations on a "Skeptical" Argument Teed Rockwell 862-881 Death, Consciousness, and Phenomenology, Steve Bindeman 882-899 The Idealist View of Consciousness After Death, Bernardo Kastrup 900-909 Consciousness, a Cosmic Phenomenon—A Hypothesis, Eva Déli 910-930 The Theory of a Natural Afterlife: A Newfound, Real Possibility for What Awaits Us at Death, Bryon K. Ehlmann 931-950 Near-Death Cases Desegregating Non-Locality/Disembodiment via Quantum Mediated Consciousness: An Extended Version of the Cell-Soul Pathway, Contzen Pereira & J Shashi Kiran Reddy 951-968 On the Possible Existence of Quantum Consciousness After Brain Death, Massimo Pregnolato & Alfredo Pereira Jr. 969-991 Science and Postmortem Survival, Edward F. Kelly 992-1011 Explorations ISS Theory: Cosmic Consciousness, Self, and Life Beyond Death in a Hyperdimensional Physics, Chris H. Hardy 1012-1035 Does the Consciousness End, Remain Awake, or Transform After Death? Radivoj Stankovich (with Micho Durdevich) 1036-1050 Big Bang Spirituality, Life, and Death, Ken Bausch 1051-1063 Death, Consciousness and the Quantum Paradigm, Ronald Peter Glasberg 1064-1077 Living With Limits: The Continuum of Consciousness, Donald Brackett 1078-1098 Mysticism, Consciousness, Death, Mike Sosteric 1099-1118 What Dies? Eternalism and the Afterlife in William James, Jonathan Bricklin 1119-1140 Theories of Consciousness and Death: Does Consciousness End, Continue, Awaken, or Transform When the Body Dies? Roger Cook 1141-1153 It’s the Other Way Around: Matter is a Form of Consciousness and Death is the End of the Illusion of Life in the World, James P. Kowall & Pradeep B. Deshpande 1154-1208 Statements A Feminine Vision for the World Consciousness, & a New Outrageous Ontology, Lorna Green 1209-1217 The Mask of Eternity: The Quest for Immortality and the Afterlife, Iona Miller 1218-1228 Are We Really “such stuff as dreams are made on”? Chris Nunn 1229-1225 Is the Afterlife a Non-Question? (Let's Hope Not), Deepak Chopra 1226-1230 Life After Death? An Improbable Essay, Stuart Kauffman 1231-1236. (shrink)